PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 54033
Common NameMICPUCDRAFT_54033
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 396aa    MW: 42661.7 Da    PI: 6.5139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
54033genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047114134223
              EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
              kC+ Cg+sF +++ ++rH  ++
    54033 114 KCERCGRSF-NPDAYTRHAARC 134
              7********.********9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139134.0E-5730No hitNo description
PfamPF139131.4E-7112134No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MTSKPRLLTC YVCAREYGTK SIAIHIPQCR RTFEAREALK RDARDRRRCP DPPPGYMDLI  60
DAIGASRSLG ETLAAASLTP PSPGSLSTRA KGSLVVDAIN DAAYRRWSDE VLRKCERCGR  120
SFNPDAYTRH AARCAGKGLS PARRSARAAA SRGGKVVDVG TKVAAKPRSP AKAPRARTIA  180
FDDDDDDDEV CGDSGDDAGD DAGDDSARCA SDEDAPHGRP VLSGVALDTT HAPSLGAVRV  240
YENEDWYLAR VSVPDCDDER FVVEISNGDR GDRAEIVVEG VVTGAADGAV ERAVPVSISN  300
PGVCVDSYFT PVLGPGTYLP ELPNPGRWSR KFALPGPVVL ELRDVDGRLP PGETRTHYKI  360
VHQQSRTLEL YFWKEKPSDV LSPVRSPGVD RGFFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064244.10.0predicted protein
TrEMBLC1N8C40.0C1N8C4_MICPC; Predicted protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP778756
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]